External Resources

Tools accessible in the GenePattern Notebook Environment that were developed by collaborators and contributors

Tool Name Description
igv.js Embeddable genomic visualization component based on the Integrative Genomics Viewer Github
NDEx The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge. Github
Cytoscape.js Cytoscape.js network visualization widget for Jupyter Notebook Github
Globus Connect With Globus, subscribers can move, share, and discover data via a single interface – whether your files live on a supercomputer, lab cluster, tape archive, public cloud or your laptop, you can manage this data from anywhere, using your existing identities, via just a web browser. Documentation
Human Cell Atlas Data Portal Repository of single-cell data created by the Human Cell Atlas project. 
FireCloud A scalable cloud-based platform for collaborative genome analysis Documentation